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Zebrafish Atlas


Slides from the Zebrafish Atlas

The following table provides an overview of completed atlas slides. Currently there are 391 slides in the database that are part of the zebrafish atlas. Slides are listed in sequence as indicated at the top of each column, i.e., the most ventral coronal slide is at the end of the series.

Each blue square below represents a slide; click on a square to view a slide.

Ages Coronal
(dorsal to ventral)
Sagittal
(left to right)
Transverse
(rostral to caudal)
24hpf
30hpf
36hpf
42hpf
48hpf *
60hpf
3dpf *
4dpf *
5dpf *
6dpf
7dpf *
10/11dpf
14dpf
17/18dpf
21dpf *
30dpf *
34dpf/7.8mm *
45dpf
56dpf/14mm
3mpf *
6mpf
12mpf/1ypf *
18mpf
24mpf/2ypf *
30mpf
36mpf/3ypf

* Highlighted ages are high-priority and are expected to be completed before other ages.


Comparisons

Wild-type vs. Golden (gol) mutant

Click on the image to the left to view a virtual slide comparison of an adult wild-type (Connor) and an adult golden (gol) mutant.

Wild-type vs. Huli hutu (hht) mutant

Mutant image (bottom) is of a 7dpf huli hutu (hht), ENU-generated mutation currently being fine mapped (in-house). Normal image (top) is of a comparable 7dpf wild-type.

  • hht causes striking architectural and cytologic changes in several organs
  • The eyes of a variable fraction of mutants are reduced in size
  • Cell types of different retinal layers are mixed together to varying degrees
  • The eye phenotype is detectable at 2dpf and can be mild to severe at 7dpf
  • Severe cytologic atypia is seen in the intestine, pancreas, liver, swim bladder, and pneumatic duct
  • This atypia includes a great variability in nuclear size and shape, frequent multinucleation, and architectural disorganization

    from Mohideen, et al "Histology-based screen for zebrafish mutants with abnormal cell differentiation" in Dev Dyn 228:414-423 2003.

H & E stain vs. Micro CT

Micro CT

60 dpf Micro CT comparison

Top: A screen-capture of part of a 3D model generated from these 1500 2D slices in a Volume Graphics software package known as VGStudio Max.

Middle: One of 1500 digital, coronal 2D slices generated by applying the Feldkamp cone-beam reconstruction algorithm to these 600 x-rays.

Bottom: One of 600 x-rays taken through 180° of the head of an unstained, 60 dpf juvenile zebrafish (one x-ray every 0.3°).

Normal vs. tumor

Top: a specimen bearing a tumor on the right side of the section. Age: unknown, but older than the bottom fish.

Bottom: a healthy specimen